Amplicon Unmodified% Modified% Reads_in_input Reads_aligned_all_amplicons Reads_aligned Unmodified Modified Discarded Insertions Deletions Substitutions Only Insertions Only Deletions Only Substitutions Insertions and Deletions Insertions and Substitutions Deletions and Substitutions Insertions Deletions and Substitutions Reference 22.94199803 77.05800197 25000 24344 24344 5585 18759 0 3335 14875 4214 1970 12499 728 76 1186 2197 103